SMTL ID : 8r5e.1

JNK1 covalently bound to RU77 cyclohexenone based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: N.158 Ligands: ANP.2 No protein-ligand interaction detected (PLIP)

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 17 residues within 4Å: Chain A: I.34, S.36, G.37, Q.39, G.40, V.42, A.55, K.57, M.110, E.111, L.112, M.113, N.116, S.157, N.158, L.170 Ligands: MG.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.37, A:A.38, A:Q.39, A:G.40, A:K.57, A:E.111, A:M.113, A:N.116, A:N.158 Salt bridges: A:K.57

1 x Y6K: ~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{R},5~{R})-6-methylidene-4-oxidanylidene-bicyclo[3.2.1]octane-1,3-dicarboxylate(Covalent)

Y6K.3: 8 residues within 4Å: Chain A: M.123, L.125, E.128, R.129, Y.132, L.133, V.161, C.165 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.125, A:E.128, A:R.129, A:Y.132, A:V.161

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: Q.343, R.347, E.348, H.349 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.343, A:Q.343, A:E.348, A:H.349 Water bridges: A:H.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poti, A. et al., The covalent coordination of cyclohexenone inhibitors in the MAP kinase docking groove. To Be Published

Release Date

2024-11-27

Peptides

Mitogen-activated protein kinase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 8

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