SMTL ID : 8r7o.1

HUWE1 WWE domain in complex with 2'F-ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

homo-tetramer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.49, N.60, N.65, R.67 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain A: F.11, D.13, P.68 Chain B: F.11, D.13, R.67 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain C: Y.49, N.60, N.65, R.67 Ligand excluded by PLIP

2 x YGC: [[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Non-covalent)

YGC.2: 12 residues within 4Å: Chain A: W.10, S.20, Y.21, S.22, N.25, F.42, T.43, A.44, G.45, Y.49, Q.58, R.67 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.22, A:S.22, A:S.22, A:S.22, A:N.25, A:G.45, A:Y.49, A:Q.58 Water bridges: A:R.67 YGC.5: 10 residues within 4Å: Chain C: W.10, S.20, Y.21, S.22, N.25, F.42, A.44, Y.49, Q.58, R.67 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.22, C:S.22, C:N.25, C:Q.58, C:R.67 Water bridges: C:R.14, C:R.14, C:S.22, C:S.22, C:A.23, C:G.45

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 2 residues within 4Å: Chain C: N.65, R.66 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.64, C:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munzker, L. et al., A ligand discovery toolbox for the WWE domain family of human E3 ligases. Commun Biol (2024)

Release Date

2024-07-31

Peptides

E3 ubiquitin-protein ligase HUWE1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E3 ubiquitin-protein ligase HUWE1

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