SMTL ID : 8rd1.1

HUWE1 WWE domain in complex with compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: Y.49, Q.58, N.60, N.65, R.67 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: R.46, R.47 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: F.11, D.13, P.68 Chain B: F.11, D.13, R.67 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: N.60, T.63, N.65 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain C: Y.49, N.60, N.65, R.67 Ligands: YP2.7 Ligand excluded by PLIP

3 x YP2: 2-(2-hydroxy-2-oxoethyl)-1,3-bis(oxidanylidene)isoindole-5-carboxylic acid(Non-covalent)

YP2.3: 10 residues within 4Å: Chain A: W.10, Y.21, S.22, N.25, F.42, A.44, R.47, Y.49, Q.58, R.67 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.21, A:Y.21, A:F.42, A:Y.49 Hydrogen bonds: A:S.22, A:S.22, A:N.25, A:Y.49, A:Q.58 Water bridges: A:N.60 Salt bridges: A:R.67 pi-Stacking: A:W.10, A:W.10 YP2.7: 12 residues within 4Å: Chain C: W.10, Y.21, S.22, N.25, F.42, A.44, R.47, Y.49, Q.58, N.60, R.67 Ligands: CL.6 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Y.21, C:Y.21, C:F.42, C:A.44 Hydrogen bonds: C:S.22, C:N.25, C:Y.49, C:Y.49, C:Q.58, C:N.60, C:R.67 Water bridges: C:R.47 Salt bridges: C:R.47, C:R.67 pi-Stacking: C:W.10 YP2.8: 11 residues within 4Å: Chain D: W.10, R.14, Y.21, S.22, N.25, F.42, A.44, Y.49, Q.58, N.60, R.67 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:W.10, D:Y.21, D:Y.21, D:A.44 Hydrogen bonds: D:S.22, D:S.22, D:N.25, D:Y.49, D:Q.58, D:N.60, D:R.67 Water bridges: D:W.10, D:Y.49, D:R.67 Salt bridges: D:R.14, D:R.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munzker, L. et al., A ligand discovery toolbox for the WWE domain family of human E3 ligases. Commun Biol (2024)

Release Date

2024-07-31

Peptides

E3 ubiquitin-protein ligase HUWE1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E3 ubiquitin-protein ligase HUWE1

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