SMTL ID : 8rbz.1

Structure of Integrator-PP2A-SOSS-CTD post-termination complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1: 7 residues within 4Å: Chain E: N.1010, K.1013, Q.1048 Chain I: N.535, N.545, Y.547, D.548 6 PLIP interactions: 4 interactions with chain I, 2 interactions with chain E Hydrophobic interactions: I:N.535 Hydrogen bonds: I:N.535, I:N.545, I:D.548, E:N.1010, E:K.1013

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain N: H.70, H.72, D.74, H.75, D.180, Q.205 Ligands: ZN.3 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:H.70, N:H.75, N:D.180 ZN.3: 5 residues within 4Å: Chain N: H.70, H.72, H.159, D.180 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:H.70, N:H.72, N:H.159

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.4: 6 residues within 4Å: Chain R: D.59, D.87, N.119, H.169, H.243 Ligands: MN.5 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:D.87, R:H.169, R:H.243 MN.5: 5 residues within 4Å: Chain R: D.59, H.61, D.87, H.243 Ligands: MN.4 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:D.59, R:H.61, R:D.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fianu, I. et al., Structural basis of Integrator-dependent RNA polymerase II termination. Nature (2024)

Release Date

2024-02-07

Peptides

SOSS complex subunit B1: A
SOSS complex subunit C: B
DNA-directed RNA polymerase subunit: C
Integrator complex subunit 1: D
Integrator complex subunit 2: E
Integrator complex subunit 3: F
Integrator complex subunit 4: G
Integrator complex subunit 5: H
Integrator complex subunit 6: I
Integrator complex subunit 7: J
Integrator complex subunit 8: K
Integrator complex subunit 9: L
Integrator complex subunit 10: M
Integrator complex subunit 11: N
Integrator complex subunit 14: O
Integrator complex subunit 15: P
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform: Q
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform: R
DSS1: S
Integrator complex subunit 13: T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
Y

D
a

E
b

F
c

G
d

H
e

I
f

J
g

K
h

L
i

M
j

N
k

O
n

P
o

Q
p

R
q

S
r

T
m

SOSS complex subunit B1

SOSS complex subunit C

DNA-directed RNA polymerase subunit

Integrator complex subunit 1

Integrator complex subunit 2

Integrator complex subunit 3

Integrator complex subunit 4

Integrator complex subunit 5

Integrator complex subunit 6

Integrator complex subunit 7

Integrator complex subunit 8

Integrator complex subunit 9

Integrator complex subunit 10

Integrator complex subunit 11

Integrator complex subunit 14

Integrator complex subunit 15

Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform

Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform

DSS1

Integrator complex subunit 13

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