SMTL ID : 8rci.1

Human p53 DNA-binding domain bound to DARPin C10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: F.21, L.22, S.24, C.32, T.33, Y.34, P.50 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.22, A:S.24, A:Y.34, A:P.50 Water bridges: A:S.24 EDO.2: 3 residues within 4Å: Chain A: G.134, S.135, D.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.134, A:D.136 EDO.4: 5 residues within 4Å: Chain B: D.3, G.5, K.6, A.32, T.33 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.3, B:T.33 Water bridges: B:G.5, B:N.31, B:T.33 EDO.5: 5 residues within 4Å: Chain A: Q.12 Chain B: L.9, E.10, D.34, Q.35 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.35, A:Q.12

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.84, H.87, C.146, C.150 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.84, A:H.87, A:C.146, A:C.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balourdas, D.I. et al., Human p53 DNA-binding domain bound to DARPin C10. to be published

Release Date

2024-12-18

Peptides

Cellular tumor antigen p53: A
DARPin C10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Cellular tumor antigen p53

DARPin C10