SMTL ID : 8rcn.1

CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, Focused region of mTOR and RAPTOR on one protomer copy.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

ANP.1: 18 residues within 4Å: Chain A: I.2163, S.2165, Q.2167, P.2169, L.2185, K.2187, E.2190, Y.2225, I.2237, G.2238, W.2239, V.2240, C.2243, T.2245, M.2345, I.2356, D.2357 Ligands: MG.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.2165, A:K.2187, A:G.2238, A:V.2240, A:T.2245, A:D.2357, A:D.2357 Salt bridges: A:K.2187

2 x MG: MAGNESIUM ION

MG.2: 8 residues within 4Å: Chain A: T.2245, L.2246, H.2247, P.2341, S.2342, N.2343, L.2344, M.2345 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:P.2341, A:S.2342, A:L.2344 MG.3: 3 residues within 4Å: Chain A: L.2185, W.2239 Ligands: ANP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anandapadamanaban, M. et al., CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, Focused region of mTOR and RAPTOR on one protomer copy. To Be Published

Release Date

2024-09-11

Peptides

Serine/threonine-protein kinase mTOR: A
Regulatory-associated protein of mTOR: B
Eukaryotic translation initiation factor 4E-binding protein 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
Y

C
X

Serine/threonine-protein kinase mTOR

Regulatory-associated protein of mTOR

Eukaryotic translation initiation factor 4E-binding protein 1

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