SMTL ID : 8rck.1

CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, Focused on one protomer copy.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

ANP.1: 16 residues within 4Å: Chain A: Q.2167, P.2169, L.2185, K.2187, Y.2225, I.2237, G.2238, W.2239, V.2240, T.2245, N.2343, M.2345, I.2356, D.2357 Ligands: MG.2, MG.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.2238, A:V.2240, A:T.2245, A:D.2357

2 x MG: MAGNESIUM ION

MG.2: 2 residues within 4Å: Chain A: Q.2167 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.3: 5 residues within 4Å: Chain A: K.2187, E.2190, L.2192, I.2237 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.2190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anandapadamanaban, M. et al., CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, Focused on one protomer copy. To Be Published

Release Date

2024-09-11

Peptides

Serine/threonine-protein kinase mTOR: A
Target of rapamycin complex subunit LST8: B
Regulatory-associated protein of mTOR: C
Eukaryotic translation initiation factor 4E-binding protein 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
Y

D
X

Serine/threonine-protein kinase mTOR

Target of rapamycin complex subunit LST8

Regulatory-associated protein of mTOR

Eukaryotic translation initiation factor 4E-binding protein 1

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