SMTL ID : 8rcr.1

human TRPM4 in SMA apo

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

12 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 14 residues within 4Å: Chain A: L.514, G.518, L.521, P.540, L.543, R.544, F.547, Y.548, Y.551 Chain C: D.564, W.598, V.601, L.602, V.605 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.514, A:R.544, A:F.547, C:V.605 CLR.2: 10 residues within 4Å: Chain A: D.442, S.443, W.444, C.447, V.481, V.484, H.488, I.500, S.504, Y.637 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.484, A:V.484 Hydrogen bonds: A:Y.637 CLR.3: 16 residues within 4Å: Chain A: V.522, V.526, S.537, D.538, F.539, I.542, L.543, F.547 Chain B: L.371, L.374, L.375, S.378, R.379, L.382, V.383, F.479 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.526, A:F.539, A:F.539, A:I.542, A:I.542, A:L.543, B:L.374, B:R.379, B:V.383 CLR.4: 8 residues within 4Å: Chain A: W.520 Chain B: C.447, V.484, H.488, I.500, V.501, S.504, Y.637 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.484, B:V.484 Hydrogen bonds: B:Y.637, B:Y.637 CLR.5: 9 residues within 4Å: Chain A: W.598, V.601, V.605 Chain B: L.521, P.540, L.543, F.547, Y.548, Y.551 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.601, B:L.521, B:Y.551 CLR.6: 14 residues within 4Å: Chain B: V.522, V.526, S.537, F.539, I.542, F.547 Chain D: L.371, L.374, L.375, S.378, R.379, L.382, V.383, F.479 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:V.522, B:F.539, B:F.539, B:I.542, B:I.542, D:R.379, D:R.379, D:L.382 CLR.7: 14 residues within 4Å: Chain C: L.371, L.374, L.375, S.378, R.379, L.382, V.383, F.479 Chain D: V.522, V.526, F.539, I.542, V.546, F.547 11 PLIP interactions: 6 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:L.374, C:L.375, C:L.375, C:R.379, C:R.379, C:L.382, D:V.522, D:V.526, D:F.539, D:F.539, D:I.542 CLR.8: 14 residues within 4Å: Chain C: L.514, G.518, L.521, P.540, L.543, R.544, F.547, Y.548, Y.551 Chain D: D.564, W.598, V.601, L.602, V.605 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:R.544, C:F.547, D:V.605 CLR.9: 15 residues within 4Å: Chain A: L.374, L.375, S.378, R.379, L.382, V.383, F.479 Chain C: V.522, V.526, S.537, D.538, F.539, I.542, L.543, F.547 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:V.522, C:V.526, C:F.539, C:F.539, C:I.542, A:R.379, A:L.382, A:F.479 CLR.10: 9 residues within 4Å: Chain C: V.481, V.484, H.488, I.500, V.501, V.503, S.504, Y.637 Chain D: W.520 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.484, C:V.484 Hydrogen bonds: C:Y.637 CLR.11: 9 residues within 4Å: Chain B: W.598, V.601, V.605 Chain D: L.521, P.540, L.543, F.547, Y.548, Y.551 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:V.601, B:V.605, D:L.521, D:F.547, D:Y.551 CLR.12: 8 residues within 4Å: Chain D: W.444, C.447, V.484, H.488, I.500, S.504, K.505, Y.637 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:V.484

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ekundayo, B. et al., Identification of a Binding Site for Small Molecule Inhibitors Targeting Human. To Be Published

Release Date

2024-12-18

Peptides

Transient receptor potential cation channel subfamily M member 4: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily M member 4

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