SMTL ID : 8rl7.1

SPNS2 in complex with homo Di-Gluebody GbD12

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 23 residues within 4Å: Chain C: Y.116, R.119, Y.120, I.238, P.239, S.242, Y.246, T.322, V.325, S.326, T.329, L.332, G.333, I.336, F.366, T.370, I.411, I.429, E.433, L.436, F.437, W.440, H.468 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:I.238, C:L.332, C:L.332, C:F.366, C:T.370, C:I.411, C:E.433, C:F.437, C:W.440 Hydrogen bonds: C:Y.116, C:Y.116, C:R.119 LMT.2: 23 residues within 4Å: Chain D: Y.116, R.119, Y.120, I.238, P.239, S.242, Y.246, T.322, V.325, S.326, T.329, L.332, G.333, I.336, F.366, T.370, I.411, I.429, E.433, L.436, F.437, W.440, H.468 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:I.238, D:L.332, D:L.332, D:F.366, D:T.370, D:I.411, D:E.433, D:F.437, D:W.440 Hydrogen bonds: D:Y.116, D:Y.116, D:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, G. et al., Di-Gluebodies: Rigid modular nanobody protein assemblies enabling simultaneous determination of high-resolution cryo-EM structures. To Be Published

Release Date

2025-01-15

Peptides

Gluebody GbD12: AB
Sphingosine-1-phosphate transporter SPNS2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
A

D
C

Membrane

We predict this structure to be a membrane protein.
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Gluebody GbD12

Sphingosine-1-phosphate transporter SPNS2

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