SMTL ID : 8rlc.1

SPNS2:sfGFP hetero dimer assembled by Di-Gluebody

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 24 residues within 4Å: Chain D: Y.116, R.119, Y.120, I.238, P.239, S.242, Y.246, T.322, V.325, S.326, T.329, L.332, G.333, I.336, F.366, T.370, I.411, I.429, G.432, E.433, L.436, F.437, W.440, H.468 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.120, D:L.332, D:L.332, D:I.429, D:E.433, D:F.437 Hydrogen bonds: D:Y.116, D:Y.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, G. et al., Di-Gluebodies: Rigid modular nanobody protein assemblies enabling simultaneous determination of high-resolution cryo-EM structures. To Be Published

Release Date

2025-01-15

Peptides

Green fluorescent protein: A
Gluebody GbEnhancer: B
Gluebody GbC4: C
Sphingosine-1-phosphate transporter SPNS2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
C

D
A

Membrane

We predict this structure to be a membrane protein.
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Green fluorescent protein

Gluebody GbEnhancer

Gluebody GbC4

Sphingosine-1-phosphate transporter SPNS2

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