SMTL ID : 8rlg.1

Perdeuterated hen egg-white lysozyme at room temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

monomer

Ligands

9 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 2 residues within 4Å: Chain A: W.63, R.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.74, A:R.74 NO3.2: 7 residues within 4Å: Chain A: F.4, A.12, R.15, H.16, D.88, I.89, T.90 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.16, A:D.88, A:I.89, A:T.90, A:T.90 NO3.3: 2 residues within 4Å: Chain A: R.46, R.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.46, A:R.69, A:R.69 NO3.4: 5 residues within 4Å: Chain A: N.66, N.75, N.78, I.79, P.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.66, A:N.75, A:N.78 Water bridges: A:N.66 NO3.5: 6 residues within 4Å: Chain A: Y.54, N.66, D.67, P.80, C.81, S.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.54, A:C.81, A:S.82 Water bridges: A:N.66 NO3.6: 2 residues within 4Å: Chain A: K.34, N.38 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.34, A:N.38, A:N.38 NO3.7: 4 residues within 4Å: Chain A: V.110, A.111, N.114, R.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.114 Water bridges: A:R.115 NO3.8: 8 residues within 4Å: Chain A: D.19, S.25, L.26, G.27, N.28, V.121, Q.122, I.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.27 NO3.9: 6 residues within 4Å: Chain A: Q.58, I.59, N.60, W.64, I.99, A.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.60, A:W.64 Water bridges: A:D.53, A:Q.58

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 3 residues within 4Å: Chain A: N.47, T.48, D.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.48, A:T.48, A:D.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramos, J. et al., Structure and dynamics of the active site of hen egg-white lysozyme from atomic resolution neutron crystallography. Structure (2025)

Release Date

2024-11-06

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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