SMTL ID : 8rli.1

Neutron structure of perdeuterated hen egg-white lysozyme at room temperature

Coordinates

PDB Format Compare

Method

NEUTRON DIFFRACTION 0.91 Å

Oligo State

monomer

Ligands

8 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: R.6, K.34, F.39, W.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.6, A:K.34 NO3.2: 6 residues within 4Å: Chain A: Y.24, G.105, M.106, N.107, W.112, K.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.24, A:Y.24, A:M.106, A:N.107 NO3.3: 3 residues within 4Å: Chain A: R.62, W.63, R.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.63, A:R.74 Water bridges: A:R.74 NO3.4: 2 residues within 4Å: Chain A: R.22, G.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.22, A:R.22 NO3.5: 7 residues within 4Å: Chain A: Q.58, I.59, N.60, W.64, I.99, A.108, W.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.60 Water bridges: A:W.64, A:W.64 NO3.6: 7 residues within 4Å: Chain A: S.25, L.26, G.27, N.28, V.121, Q.122, I.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.25, A:G.27, A:Q.122 NO3.7: 5 residues within 4Å: Chain A: N.66, N.75, N.78, I.79, P.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.66, A:N.75, A:I.79 NO3.8: 7 residues within 4Å: Chain A: F.4, A.12, R.15, H.16, D.88, I.89, T.90 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.16, A:D.88, A:I.89, A:T.90, A:T.90 Water bridges: A:R.15

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 4 residues within 4Å: Chain A: N.45, N.47, T.48, D.49 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.47 Hydrogen bonds: A:T.48, A:T.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramos, J. et al., Structure and dynamics of the active site of hen egg-white lysozyme from atomic resolution neutron crystallography. Structure (2025)

Release Date

2024-11-06

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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