SMTL ID : 8rq8.1

Crystal structure of CRBN-midi in complex with mezigdomide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION

ZN.1: 5 residues within 4Å: Chain A: C.226, C.229, T.232, C.294, C.297 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.226, A:C.229, A:C.294, A:C.297

1 x QFC: Mezigdomide

QFC.2: 13 residues within 4Å: Chain A: F.63, D.110, I.113, N.254, P.255, H.256, E.280, H.281, S.282, W.283, W.289, W.303, F.305 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.63, A:F.63, A:W.283, A:W.289, A:W.303, A:F.305 Hydrogen bonds: A:N.254, A:H.281, A:W.283 pi-Stacking: A:W.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroupova, A. et al., Design of a Cereblon construct for crystallographic and biophysical studies of protein degraders. Nat Commun (2024)

Release Date

2024-09-25

Peptides

Protein cereblon: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein cereblon

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