SMTL ID : 8rqa.1

Crystal structure of CRBN-midi in complex with Lenalidomide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x LVY: S-Lenalidomide

LVY.1: 9 residues within 4Å: Chain A: N.254, P.255, H.256, H.281, S.282, W.283, W.289, W.303, F.305 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.255, A:W.283, A:W.289, A:W.289, A:W.303, A:W.303 Hydrogen bonds: A:N.254, A:H.281, A:W.283

1 x ZN: ZINC ION

ZN.2: 6 residues within 4Å: Chain A: C.226, Q.228, C.229, C.294, I.296, C.297 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.226, A:C.229, A:C.294, A:C.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroupova, A. et al., Design of a Cereblon construct for crystallographic and biophysical studies of protein degraders. Nat Commun (2024)

Release Date

2024-09-25

Peptides

Protein cereblon: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein cereblon

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