SMTL ID : 8rrb.1

Galectin-3 with a small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-~{tert}-butyl-4-[4-[[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]methyl]-1,2,3-triazol-1-yl]piperidine-1-carboxamide

01.1: 18 residues within 4Å: Chain A: R.32, I.33, A.34, H.46, N.48, R.50, V.60, N.62, W.69, G.70, R.71, E.72, R.74, S.125, G.126 Ligands: 2PE.2, SCN.3, SCN.4 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.34, A:E.72 Hydrogen bonds: A:H.46, A:R.50, A:N.62, A:R.71, A:E.72, A:E.72, A:E.72 Water bridges: A:H.46, A:R.50, A:W.69, A:E.72, A:R.74 pi-Stacking: A:H.46 pi-Cation interactions: A:R.32

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 3 residues within 4Å: Chain A: R.32 Ligands: 01.1, SCN.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.32, A:R.32

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.3: 5 residues within 4Å: Chain A: R.32, N.48, R.50 Ligands: 01.1, 2PE.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.32 SCN.4: 6 residues within 4Å: Chain A: V.4, P.5, R.32, S.125, G.126 Ligands: 01.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.32, A:R.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Remen, L. et al., Galectin-3 with a small molecule inhibitor. To Be Published

Release Date

2025-01-29

Peptides

Galectin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-3

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