SMTL ID : 8rtn.1

Human thrombin in complex with a trivalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-2-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: L.409, N.416 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain B: Y.553, R.596, K.599 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.599 Water bridges: B:R.596, B:G.598

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maxwell, J.W.C. et al., Engineering Ultrapotent Trivalent Anticoagulants Through Hybridisation of Salivary Peptides from Multiple Haematophagous Organisms. Chem Sci (2025)

Release Date

2025-02-12

Peptides

Prothrombin: AB
Synthetic trivalent inhibitor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Prothrombin

Synthetic trivalent inhibitor

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