SMTL ID : 9cln.1

Cryo-EM model derived from localized reconstruction of human adenovirus 5 (Ad5)-hexon-FII complex at 3.9A resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-mer

Ligands

7 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: E.424, T.425 Chain D: E.68 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.425 CA.2: 2 residues within 4Å: Chain D: E.50, E.69 No protein-ligand interaction detected (PLIP) CA.3: 5 residues within 4Å: Chain D: E.50, G.54, E.59, E.69, E.72 No protein-ligand interaction detected (PLIP) CA.4: 5 residues within 4Å: Chain D: A.44, E.49, E.59, E.69 Ligands: CA.5 No protein-ligand interaction detected (PLIP) CA.5: 7 residues within 4Å: Chain D: A.44, N.45, T.46, E.49, E.59, E.63 Ligands: CA.4 No protein-ligand interaction detected (PLIP) CA.6: 4 residues within 4Å: Chain D: E.49, R.58, E.59, E.63 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain D: E.57 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mudrick, H.E. et al., Structure-derived insights from blood factors binding to the surfaces of different adenoviruses. Nat Commun (2024)

Release Date

2024-11-27

Peptides

Hexon protein: ABC
Prothrombin: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

D
Z

Hexon protein

Prothrombin

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