SMTL ID : 8rvf.1

CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE IN COMPLEX WITH COMPOUND 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x 01: [6-[[2,2-bis(fluoranyl)-1$l^{4},3-diaza-2$l^{4}-boratricyclo[7.3.0.0^{3,7}]dodeca-1(12),4,6,8,10-pentaen-8-yl]methyl]-2-azaspiro[3.3]heptan-2-yl]-[6-(3-cyclopropyl-1,2,4-triazol-1-yl)-2-azaspiro[3.3]heptan-2-yl]methanone

01.1: 21 residues within 4Å: Chain A: G.70, A.71, E.73, H.141, S.142, M.143, A.171, F.179, L.204, S.205, E.210, V.211, Y.214, L.225, G.230, L.233, L.234, L.261, C.262, V.290, K.293 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.73, A:A.171, A:L.204, A:L.204, A:Y.214, A:Y.214, A:L.233, A:L.234, A:V.290, A:V.290, A:K.293 Hydrogen bonds: A:A.71, A:M.143 Salt bridges: A:E.73

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: H.114, R.118, L.121, E.154, R.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.114, A:R.155 Water bridges: A:H.114, A:D.125 EDO.3: 5 residues within 4Å: Chain A: E.80, E.210, H.292, K.293, F.303 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.210, A:K.293 Water bridges: A:R.77, A:E.80, A:K.293 EDO.4: 6 residues within 4Å: Chain A: Q.32, G.101, R.107, P.218, L.219, C.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.32, A:G.101, A:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hentsch, A. et al., Miniaturized Fluorescent MAGL Probes with Drug Like Properties for Translational Research. To Be Published

Release Date

2025-02-12

Peptides

Monoglyceride lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Monoglyceride lipase

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