SMTL ID : 8rz7.1

(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.37 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: I.648, A.649, F.650, I.651, N.653, P.670, N.671, M.672, G.673, G.674, K.675, S.676, T.677, Y.815 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:I.651, A:I.651, A:N.671, A:M.672, A:G.673, A:G.674, A:K.675, A:S.676, A:T.677, A:T.677 Salt bridges: A:K.675 pi-Stacking: A:Y.815, A:Y.815 ADP.3: 11 residues within 4Å: Chain B: Q.876, Y.877, V.878, N.898, G.901, K.902, S.903, S.904, E.976, Y.1057 Ligands: MG.4 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:V.878, B:V.878, B:G.901, B:K.902, B:S.903, B:S.904, B:S.904, B:E.976 Salt bridges: B:K.902, B:K.902 pi-Stacking: B:Y.877, B:Y.1057, B:Y.1057

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.676, E.749 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.676 MG.4: 4 residues within 4Å: Chain B: S.903, D.975, E.976 Ligands: ADP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.903

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.-H. et al., (CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp. To Be Published

Release Date

2024-11-13

Peptides

DNA mismatch repair protein Msh2: A
DNA mismatch repair protein Msh3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA mismatch repair protein Msh2

DNA mismatch repair protein Msh3

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