SMTL ID : 8rz8.1

MutSbeta-ATPgS with straight MSH2 clamp

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.06 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.676, D.748 Chain B: S.950 Ligands: AGS.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.676, A:D.748 MG.3: 4 residues within 4Å: Chain A: S.723 Chain B: S.903, D.975 Ligands: AGS.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.903

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 20 residues within 4Å: Chain A: I.648, A.649, F.650, I.651, P.670, N.671, M.672, G.673, G.674, K.675, S.676, T.677, H.783, Y.815 Chain B: I.945, G.948, S.950, T.951, F.952 Ligands: MG.1 15 PLIP interactions: 12 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:I.651, A:I.651, A:M.672, A:G.673, A:G.674, A:K.675, A:K.675, A:S.676, A:T.677, A:H.783, B:I.945, B:G.948, B:S.950 Salt bridges: A:K.675 pi-Stacking: A:Y.815 AGS.4: 23 residues within 4Å: Chain A: Q.718, G.721, S.723, T.724, F.725, M.726 Chain B: I.867, Q.876, Y.877, V.878, N.880, P.897, N.898, M.899, G.900, G.901, K.902, S.903, S.904, E.976, H.1010, Y.1057 Ligands: MG.3 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:V.878, B:V.878, B:N.880, B:N.898, B:M.899, B:G.900, B:G.901, B:K.902, B:K.902, B:S.903, B:S.904, B:S.904, B:H.1010, B:Y.1057, A:S.723, A:T.724 Salt bridges: B:K.902 pi-Stacking: B:Y.877, B:Y.1057, B:Y.1057

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.-H. et al., MutSbeta-ATPgS complex with straight MSH2 clamp. To Be Published

Release Date

2024-11-13

Peptides

DNA mismatch repair protein Msh2: A
DNA mismatch repair protein Msh3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA mismatch repair protein Msh2

DNA mismatch repair protein Msh3

Related Entries With Identical Sequence