SMTL ID : 8s7c.1 (2 other biounits)

Ternary Complex of Cachd1, FZD5 and LRP6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 5 residues within 4Å: Chain C: D.48, N.49, F.65, M.66, N.67 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.2: 3 residues within 4Å: Chain A: P.580, N.582, E.598 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.580 NAG.3: 4 residues within 4Å: Chain A: A.599, Y.600, N.601, E.624 No protein-ligand interaction detected (PLIP) NAG.4: 5 residues within 4Å: Chain A: P.896, N.897, N.919, S.921, L.922 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.897 Hydrogen bonds: A:N.919, A:S.921 NAG.5: 3 residues within 4Å: Chain A: I.850, N.954, T.956 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.956 NAG.6: 3 residues within 4Å: Chain A: R.564, T.997, N.999 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.564, A:R.564, A:T.997 NAG.7: 4 residues within 4Å: Chain C: Y.219, N.234, S.237, N.240 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.219 Hydrogen bonds: C:S.237 NAG.8: 3 residues within 4Å: Chain C: A.299, D.300, N.301 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.299 NAG.9: 7 residues within 4Å: Chain C: I.389, W.405, N.414, T.416, G.420, S.422 Ligands: NAG.10 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.414, C:G.420 NAG.10: 4 residues within 4Å: Chain C: V.379, I.389, S.422 Ligands: NAG.9 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.389

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Powell, G.T. et al., Cachd1 interacts with Wnt receptors and regulates neuronal asymmetry in the zebrafish brain. Science (2024)

Release Date

2024-04-24

Peptides

VWFA and cache domain-containing protein 1: A
Frizzled-5: B
Low-density lipoprotein receptor-related protein 6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

VWFA and cache domain-containing protein 1

Frizzled-5

Low-density lipoprotein receptor-related protein 6

Related Entries With Identical Sequence