SMTL ID : 8s7c.2 (2 other biounits)

Ternary Complex of Cachd1, FZD5 and LRP6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)

NAG.1: 1 residues within 4Å: Chain A: N.582 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.582 NAG.2: 4 residues within 4Å: Chain A: A.599, Y.600, N.601, E.624 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.624 NAG.3: 3 residues within 4Å: Chain A: N.897, N.919, S.921 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.897 Hydrogen bonds: A:N.919, A:S.921, A:S.921 NAG.4: 3 residues within 4Å: Chain A: F.53, N.954, T.956 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: R.564, T.997, N.999 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.564, A:R.564, A:N.999 NAG.6: 2 residues within 4Å: Chain B: R.19, N.24 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.19, B:N.24 NAG.7: 2 residues within 4Å: Chain C: N.67, S.69 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.69, C:S.69 NAG.8: 4 residues within 4Å: Chain C: D.218, N.234, T.236, S.237 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:D.218 Hydrogen bonds: C:N.234 NAG.9: 3 residues within 4Å: Chain C: A.299, D.300, N.301 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.299 NAG.10: 8 residues within 4Å: Chain C: V.378, W.405, N.414, T.416, S.422, G.424, V.425 Ligands: NAG.11 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.414, C:T.416, C:S.422 NAG.11: 1 residues within 4Å: Ligands: NAG.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Cachd1 is a Frizzled- and LRP6-interacting protein required for neurons to acquire left-right asymmetric character. Science (2024)

Release Date

2024-04-24

Peptides

VWFA and cache domain-containing protein 1: A
Frizzled-5: B
Low-density lipoprotein receptor-related protein 6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

VWFA and cache domain-containing protein 1

Frizzled-5

Low-density lipoprotein receptor-related protein 6

Related Entries With Identical Sequence