SMTL ID : 8sdt.1

Crystal structure of PDC-3 beta-lactamase in complex with the boronic acid inhibitor S02030

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 4 residues within 4Å: Chain A: E.269, R.273, A.276, D.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.280

1 x ZXM: 1-{(2R)-2-(dihydroxyboranyl)-2-[(thiophen-2-ylacetyl)amino]ethyl}-1H-1,2,3-triazole-4-carboxylic acid(Covalent)

ZXM.2: 11 residues within 4Å: Chain A: S.90, K.93, Q.146, Y.177, N.179, Y.249, G.344, S.345, T.346, N.347, N.370 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.249 Hydrogen bonds: A:S.90, A:Q.146, A:N.179, A:S.345, A:S.345, A:S.345, A:N.370 Water bridges: A:T.343, A:T.346, A:N.373, A:N.373, A:N.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mack, A.R. et al., Natural protein engineering in the Omega-loop: the role of Y221 in ceftazidime and ceftolozane resistance in Pseudomonas -derived cephalosporinase. Antimicrob.Agents Chemother. (2023)

Release Date

2023-08-16

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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