SMTL ID : 8sgf.1 (1 other biounit)

KLHDC2 Kelch Domain with KLHDC2 c-terminal peptide bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: E.133, I.135, D.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.133, A:D.136 GOL.2: 7 residues within 4Å: Chain A: R.236, R.238, D.239, R.241, T.289, K.291, L.343 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.239, A:R.241, A:R.241, A:K.291, A:K.291 GOL.3: 4 residues within 4Å: Chain A: I.263, C.264, W.298, Q.309 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.309, A:Q.309 Water bridges: A:V.266, A:D.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hickey, C.M. et al., Co-opting the E3 ligase KLHDC2 for targeted protein degradation by small molecules. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-01-03

Peptides

Kelch domain-containing protein 2: A
HIS-SER-VAL-ASN-GLN-ARG-PHE-GLY-SER-ASN-ASN-THR-SER-GLY-SER: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
Z

Kelch domain-containing protein 2

HIS-SER-VAL-ASN-GLN-ARG-PHE-GLY-SER-ASN-ASN-THR-SER-GLY-SER

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