SMTL ID : 8sgg.1 (1 other biounit)

Crystal structure of Cy137D09, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: P.135, S.136, V.137, K.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.135, A:V.137, A:K.225 GOL.2: 7 residues within 4Å: Chain A: K.159, D.160, V.185, Q.187, S.193 Chain B: T.141, S.189 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.187, A:S.193, B:T.141, B:T.141, B:S.189 Water bridges: A:D.160, A:D.160, A:D.160, A:D.160 GOL.3: 7 residues within 4Å: Chain A: G.43 Chain B: T.8, D.93, Y.95, G.109, G.110, R.112 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.43, B:T.8, B:Y.95 Water bridges: B:D.93, B:Y.95 GOL.4: 7 residues within 4Å: Chain B: V.154, E.155, V.156, T.171, T.172, K.173, P.174 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.156, B:V.156, B:T.172 Water bridges: B:T.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joyce, M.G. et al., Structural basis for complement receptor engagement and virus neutralization through Epstein-Barr virus gp350. Immunity (2025)

Release Date

2024-04-17

Peptides

Cy137D09 Fab heavy chain: A
Cy137D09 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cy137D09 Fab heavy chain

Cy137D09 Fab light chain

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