SMTL ID : 8sgg.2 (1 other biounit)

Crystal structure of Cy137D09, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: P.135, S.136, V.137, V.223, K.225 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.135, A:V.137 GOL.2: 5 residues within 4Å: Chain A: K.159, D.160, Q.187 Chain B: K.139, S.189 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.189, A:K.159 Water bridges: A:D.160, A:D.160 GOL.3: 7 residues within 4Å: Chain A: S.7, G.8, P.9, G.10, V.123, L.124, P.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8, A:P.9, A:L.124 GOL.4: 3 residues within 4Å: Chain B: K.41, S.178, N.180 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joyce, M.G. et al., Structural basis for complement receptor engagement and virus neutralization through Epstein-Barr virus gp350. Immunity (2025)

Release Date

2024-04-17

Peptides

Cy137D09 Fab heavy chain: A
Cy137D09 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cy137D09 Fab heavy chain

Cy137D09 Fab light chain

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