SMTL ID : 8smi.1

Crystal structure of antibody WRAIR-2123 in complex with SARS-CoV-2 receptor binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: F.12, N.13, V.37, S.41, F.44 Chain C: D.151, N.152, V.191 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:N.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sankhala, R.S. et al., Antibody targeting of conserved sites of vulnerability on the SARS-CoV-2 spike receptor-binding domain. Structure (2024)

Release Date

2023-12-13

Peptides

Spike protein S1: A
WRAIR-2123 Fab heavy chain: B
WRAIR-2123 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

WRAIR-2123 Fab heavy chain

WRAIR-2123 Fab light chain

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