SMTL ID : 8sp5.1 (1 other biounit)

LINE-1 retrotransposon endonuclease domain complex with Mn2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 2 residues within 4Å: Chain A: N.16, E.43 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.43, H2O.1, H2O.2, H2O.2, H2O.4

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.17, L.18, N.19, T.44, H.45 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.18, A:N.19, A:N.19 Water bridges: A:S.20 Salt bridges: A:H.45 SO4.3: 4 residues within 4Å: Chain A: A.21, R.24, H.25, R.53 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.24, A:R.24, A:K.55 Salt bridges: A:R.24, A:H.25 SO4.4: 2 residues within 4Å: Chain A: H.25, R.26 4 PLIP interactions: 4 interactions with chain A Water bridges: A:H.25, A:R.26 Salt bridges: A:H.25, A:R.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Ordine, A.M. et al., Identification and characterization of small molecule inhibitors of the LINE-1 retrotransposon endonuclease. Nat Commun (2024)

Release Date

2024-05-22

Peptides

LINE-1 retrotransposon endonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LINE-1 retrotransposon endonuclease

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