SMTL ID : 8sp7.1

LINE-1 retrotransposon endonuclease domain complex with tranexamic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x AMH: TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID(Non-covalent)

AMH.1: 10 residues within 4Å: Chain A: N.118, N.147, T.148, P.149, R.155, F.193, A.196, P.197, S.202, I.204 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.204, A:I.204 Hydrogen bonds: A:S.202 Water bridges: A:T.148, A:T.148 Salt bridges: A:R.155

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: I.62, Y.63, Q.64, R.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.64 Water bridges: A:Q.64 Salt bridges: A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Ordine, A.M. et al., Identification and characterization of small molecule inhibitors of the LINE-1 retrotransposon endonuclease. Nat Commun (2024)

Release Date

2024-05-22

Peptides

LINE-1 retrotransposon endonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LINE-1 retrotransposon endonuclease

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