SMTL ID : 8sqg.2 (1 other biounit)

OXA-48 bound to inhibitor CDD-2801

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.1: 1 residues within 4Å: Ligands: X6Q.2 No protein-ligand interaction detected (PLIP)

1 x X6Q: (1M)-3'-(benzyloxy)-5-[2-(methylamino)-2-oxoethoxy][1,1'-biphenyl]-3,4'-dicarboxylic acid

X6Q.2: 12 residues within 4Å: Chain A: S.70, I.102, T.104, W.105, Y.117, V.120, L.158, T.209, Y.211, R.214, R.250 Ligands: BCT.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.102, A:W.105, A:V.120, A:Y.211, A:Y.211 Hydrogen bonds: A:T.209 Water bridges: A:S.118, A:T.209, A:T.213, A:R.214, A:R.214, A:R.250 Salt bridges: A:R.214, A:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S. et al., Exploiting the Carboxylate-Binding Pocket of beta-Lactamase Enzymes Using a Focused DNA-Encoded Chemical Library. J.Med.Chem. (2024)

Release Date

2024-01-03

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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