SMTL ID : 8suf.1 (3 other biounits)

The complex of TOL-1 ectodomain bound to LAT-1 Lectin domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 6 residues within 4Å: Chain A: E.254, N.295, S.297, R.298, D.318, Y.321 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.298, A:R.298

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: Y.321, H.346, S.370, N.394 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: D.824, G.848, N.872 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: R.107, T.161, N.183, S.185, D.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.185, A:D.207 NAG.5: 3 residues within 4Å: Chain A: G.355, A.358, N.359 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.358 NAG.6: 6 residues within 4Å: Chain A: R.747, I.773, S.775, G.776, H.797, N.799 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.747, A:H.797, A:N.799

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carmona Rosas, G. et al., Structural basis and functional roles for Toll-like receptor binding to Latrophilin adhesion-GPCR in embryo development. To Be Published

Release Date

2024-05-15

Peptides

TIR domain-containing protein: A
Latrophilin-like protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

TIR domain-containing protein

Latrophilin-like protein 1

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