SMTL ID : 8suf.2 (3 other biounits)

The complex of TOL-1 ectodomain bound to LAT-1 Lectin domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 7 residues within 4Å: Chain A: T.161, R.162, N.183, S.185, D.207, S.209, S.230 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.162

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 10 residues within 4Å: Chain A: Y.233, E.254, A.274, N.295, S.297, R.298, M.316, D.318, Y.321, H.343 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.298, A:Y.321, A:E.345

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 7 residues within 4Å: Chain A: R.747, S.775, H.797, N.799, G.800, D.821, D.824 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.747

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: R.280, N.305 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.305 NAG.5: 3 residues within 4Å: Chain A: H.346, S.370, N.394 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.370, A:N.394 NAG.6: 2 residues within 4Å: Chain A: Y.983, N.984 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carmona Rosas, G. et al., Structural basis and functional roles for Toll-like receptor binding to Latrophilin adhesion-GPCR in embryo development. To Be Published

Release Date

2024-05-15

Peptides

TIR domain-containing protein: A
Latrophilin-like protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

TIR domain-containing protein

Latrophilin-like protein 1

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