SMTL ID : 8sun.1

TMEM16F 1PBC

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.12 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 6 residues within 4Å: Chain A: P.289, G.293, Q.294, R.309, N.311, I.312 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.312 Hydrogen bonds: A:R.309, A:R.309 NAG.2: 4 residues within 4Å: Chain A: N.734, T.736, T.754, L.755 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.734, A:T.736, A:T.754 NAG.3: 4 residues within 4Å: Chain A: N.727, N.728, L.730, R.757 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.727, A:R.757, A:R.757 NAG.5: 7 residues within 4Å: Chain B: P.289, G.293, Q.294, R.309, N.311, I.312, C.314 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.289 NAG.6: 3 residues within 4Å: Chain B: N.727, V.732, R.757 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.732 Hydrogen bonds: B:N.727 NAG.7: 5 residues within 4Å: Chain B: N.734, I.735, T.736, T.754, L.755 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.734, B:T.754

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: Y.248, E.616, E.619, E.648, D.652, K.655 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.616, A:E.616, A:E.648, A:D.652, A:D.652 CA.8: 6 residues within 4Å: Chain B: Y.248, E.573, E.616, E.619, E.648, D.652 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.573, B:E.616, B:E.619, B:E.648, B:D.652 CA.9: 5 residues within 4Å: Chain B: N.569, N.570, E.573, E.619, E.648 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.619, B:E.648, B:E.648

1 x JRF: 1-Hydroxy-3-(trifluoromethyl)pyrido[1,2-a]benzimidazole-4-carbonitrile(Covalent)

JRF.10: 9 residues within 4Å: Chain B: F.270, Y.274, K.319, F.323, M.456, L.552, T.555, T.556, T.559 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.556, B:T.559 Hydrogen bonds: B:K.319 pi-Stacking: B:F.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, S. et al., Identification of a drug binding pocket in TMEM16F calcium-activated ion channel and lipid scramblase. Nat Commun (2023)

Release Date

2023-10-11

Peptides

Anoctamin-6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Anoctamin-6

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