SMTL ID : 8tai.1

TMEM16F, with Calcium and PIP2, no inhibitor, Cl2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 5 residues within 4Å: Chain A: P.289, G.293, R.309, N.311, I.312 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: N.734, T.736, L.755, P.765 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.755 Hydrogen bonds: A:T.736 NAG.3: 3 residues within 4Å: Chain A: N.727, V.732, R.757 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.732 Hydrogen bonds: A:N.727 NAG.5: 6 residues within 4Å: Chain B: P.289, G.293, R.309, N.311, I.312, C.314 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.309, B:N.311 NAG.6: 3 residues within 4Å: Chain B: N.727, V.732, R.757 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.727 NAG.7: 5 residues within 4Å: Chain B: N.734, T.736, D.737, T.754, L.755 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.734, B:T.736

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: E.573, E.616, E.619, E.648, D.652, K.655 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.616, A:E.616, A:E.648, A:D.652 CA.8: 6 residues within 4Å: Chain B: Y.248, E.573, E.616, E.619, E.648, D.652 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.616, B:E.619, B:E.648, B:D.652, B:D.652 CA.9: 5 residues within 4Å: Chain B: N.569, N.570, E.573, E.619, E.648 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.619, B:E.648, B:E.648

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, S. et al., Identification of a drug binding pocket in TMEM16F calcium-activated ion channel and lipid scramblase. Nat Commun (2023)

Release Date

2023-09-06

Peptides

Anoctamin-6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Anoctamin-6

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