SMTL ID : 8svs.1

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-328

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-dimer

Ligands

2 x WU2: (1P)-N-(5-tert-butyl-2-{[(3S)-hexan-3-yl]oxy}phenyl)-1-(2,4-dimethoxy-5-methylphenyl)-5-methyl-1H-1,2,3-triazole-4-carboxamide(Non-covalent)

WU2.1: 21 residues within 4Å: Chain A: L.84, L.87, V.89, L.117, L.118, M.121, S.125, A.158, F.159, C.162, Q.163, F.166, W.177, M.201, H.205, H.285, T.286, L.289, M.303, L.306, F.307 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.84, A:V.89, A:V.89, A:L.117, A:A.158, A:F.159, A:F.166, A:F.166, A:W.177, A:W.177, A:W.177, A:L.289, A:F.307 Hydrogen bonds: A:Q.163 pi-Stacking: A:H.285 WU2.2: 21 residues within 4Å: Chain B: L.84, L.87, V.89, L.117, L.118, M.121, S.125, F.129, A.158, F.159, C.162, Q.163, F.166, W.177, M.201, H.205, H.285, T.286, L.289, L.306, F.307 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.84, B:V.89, B:V.89, B:L.117, B:L.118, B:F.129, B:A.158, B:F.159, B:F.166, B:F.166, B:W.177, B:W.177, B:W.177, B:L.289, B:F.307 Hydrogen bonds: B:Q.163 pi-Stacking: B:H.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Maldonado, E. et al., Chemical manipulation of an activation/inhibition switch in the nuclear receptor PXR. Nat Commun (2024)

Release Date

2024-05-15

Peptides

Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1

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