SMTL ID : 8svy.1

MBP-Mcl1 in complex with ligand 10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156, A:R.345

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: H.65, Y.177, I.330, M.331, P.332, N.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.65, A:N.333 Water bridges: A:N.333 EDO.4: 5 residues within 4Å: Chain A: K.27, Y.284, T.287, E.289, G.290 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.289, A:E.289 Water bridges: A:E.289 EDO.5: 6 residues within 4Å: Chain A: K.16, G.17, Y.18, N.19, D.297, K.298 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.18, A:N.19, A:D.297, A:K.298 EDO.6: 6 residues within 4Å: Chain A: I.200, K.201, A.351, A.352, S.353, G.354 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: K.363, E.370, S.399 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.363, A:S.399 Water bridges: A:K.363

1 x WUC: (15P)-17-chloro-33-fluoro-12-[(2-methoxyethoxy)methyl]-5,14,22-trimethyl-28-oxa-9-thia-5,6,13,14,22-pentaazaheptacyclo[27.7.1.1~4,7~.0~11,15~.0~16,21~.0~20,24~.0~30,35~]octatriaconta-1(36),4(38),6,11(15),12,16,18,20,23,29(37),30,32,34-tridecaene-23-carboxylic acid(Non-covalent)

WUC.7: 18 residues within 4Å: Chain A: H.421, T.423, A.424, F.425, M.428, L.432, V.446, M.447, V.450, F.451, R.460, T.463, L.464, F.467, G.468, V.471, L.487, I.491 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.425, A:L.432, A:V.446, A:F.451, A:T.463, A:F.467, A:F.467, A:F.467, A:I.491 Salt bridges: A:R.460 pi-Stacking: A:F.467 Halogen bonds: A:A.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demin, S. et al., Macrocyclic Carbon-Linked Pyrazoles As Novel Inhibitors of MCL-1. Acs Med.Chem.Lett. (2023)

Release Date

2023-08-09

Peptides

Maltose/maltodextrin-binding periplasmic protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera

Related Entries With Identical Sequence