SMTL ID : 8swc.1

RNase H complex with ASO (OOO) and RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: N.228, W.229, G.232, W.233 Chain C: C.11, C.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.228, A:W.229 PO4.4: 3 residues within 4Å: Chain B: G.9, G.10, G.11 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.2: 2 residues within 4Å: Chain A: P.185, R.192 No protein-ligand interaction detected (PLIP) CA.5: 2 residues within 4Å: Chain B: G.2, G.3 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain B: G.13, A.14 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain B: A.18, G.19 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iwamoto, N. et al., Crystal structure of RNase H/RNA/PO-ASO complex at an atomic level. To Be Published

Release Date

2024-06-19

Peptides

Ribonuclease H1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease H1

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