SMTL ID : 8t6f.1

Crystal structure of human MBP-Myeloid cell leukemia 1 (Mcl-1) in complex with BRD810 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156, A:R.345

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: H.40 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.40, A:H.40, H2O.6, H2O.9, H2O.12

1 x YI7: (3aM,9S,15R)-4-chloro-3-ethyl-7-{3-[(6-fluoronaphthalen-1-yl)oxy]propyl}-2-methyl-15-[2-(morpholin-4-yl)ethyl]-2,10,11,12,13,15-hexahydropyrazolo[4',3':9,10][1,6]oxazacycloundecino[8,7,6-hi]indole-8-carboxylic acid(Non-covalent)

YI7.3: 18 residues within 4Å: Chain A: H.421, A.424, F.425, G.427, M.428, K.431, L.432, M.447, V.450, F.451, R.460, T.463, L.464, F.467, G.468, V.471, L.487, I.491 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.432, A:F.451, A:T.463, A:F.467, A:F.467, A:F.467, A:I.491 Salt bridges: A:R.460 pi-Stacking: A:F.467 Halogen bonds: A:A.424

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: R.497, T.498, K.499, R.500, D.501 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.501 Salt bridges: A:D.501

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 5 residues within 4Å: Chain A: F.93, M.322, A.325, Q.326, G.328 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.326 Water bridges: A:Q.326, A:G.328, A:I.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rauh, U. et al., BRD-810 is a highly selective MCL1 inhibitor with optimized in vivo clearance and robust efficacy in solid and hematological tumor models. Nat Cancer (2024)

Release Date

2024-06-19

Peptides

Maltose/maltodextrin-binding periplasmic protein/Induced myeloid leukemia cell differentiation protein Mcl-1 Chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein/Induced myeloid leukemia cell differentiation protein Mcl-1 Chimera

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