SMTL ID : 8t77.1

SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x DA- DC- DA- DG- DT- DA- DC- DA- DA: NTS(Non-covalent)

DA-DC-DA-DG-DT-DA-DC-DA-DA.1: 20 residues within 4Å: Chain A: R.1114, S.1116, K.1118, L.1135, W.1136, P.1137, A.1215, S.1216, Q.1219, Q.1221, Q.1335 Chain C: T.1, T.2, G.3, T.4, A.5, C.6, T.7, G.8, T.9 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.1107, A:E.1108, A:S.1109, A:Q.1335 Salt bridges: A:K.1107, A:R.1111, A:K.1151, A:K.1153, A:K.1340

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hibshman, G.N. et al., Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun (2024)

Release Date

2024-05-01

Peptides

CRISPR-associated endonuclease Cas9/Csn1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CRISPR-associated endonuclease Cas9/Csn1

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