SMTL ID : 8t8r.1

Sortilin-PGRN peptide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: E.70, D.71, Y.72, K.74, S.502, M.503, N.504, D.525, Q.574, R.577 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.71 NAG-NAG-BMA.2: 8 residues within 4Å: Chain A: A.277, A.278, N.279, D.280, N.328, T.330, Y.336, P.404 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.404 Hydrogen bonds: A:D.280

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.20 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain A: N.84, Q.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srivastava, D.B. et al., Structural studies of Sortilin-PGRN peptide complex. To Be Published

Release Date

2024-06-26

Peptides

Sortilin: A
Paragranulin peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sortilin

Paragranulin peptide

Related Entries With Identical Sequence