SMTL ID : 8t8s.1 (1 other biounit)

Sortilin-PGRN peptide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: D.71, Y.72, K.74, R.501, S.502, M.503, N.504, D.525, Q.574, R.577 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 8 residues within 4Å: Chain A: A.277, A.278, N.279, D.280, F.284, N.328, T.330, Y.336 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.280, A:D.280

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: L.82, N.84, Q.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.131, A:Q.131

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: L.558, G.559, D.594 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: P.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srivastava, D.B. et al., Structural studies of Sortilin-PGRN peptide complex. To Be Published

Release Date

2024-06-26

Peptides

Sortilin: A
Paragranulin peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Sortilin

Paragranulin peptide

Related Entries With Identical Sequence