SMTL ID : 8tgp.1

Crystal structure of SIRT2 with FAM-PEG4-H4K16(myristoyl) peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.162, C.167, C.188, C.191 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.162, A:C.167, A:C.188, A:C.191

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 11 residues within 4Å: Chain A: F.63, F.86, F.98, P.107, F.110, I.136, H.154, F.157, I.199, V.200 Chain B: K.9 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.63, A:F.86, A:F.98, A:F.110, A:I.136, A:F.157, A:F.157, A:F.157, A:I.199 Hydrogen bonds: A:H.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Effects of Dimerization on the Deacylase Activities of Human SIRT2. Biochemistry (2023)

Release Date

2024-01-24

Peptides

NAD-dependent protein deacetylase sirtuin-2: A
H4K16(myristoyl) peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent protein deacetylase sirtuin-2

H4K16(myristoyl) peptide

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