SMTL ID : 8tgv.1

CryoEM structure of Fab HC84.26-HCV E2 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-4-4-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: I.60, N.61, Y.165, W.167 Chain B: G.47, G.48 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 7 residues within 4Å: Chain A: S.118, D.119, Q.139, N.194, T.196, F.198, K.200 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain D: I.60, N.61, R.62, Y.165 Chain E: T.49 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.60 NAG-NAG.4: 8 residues within 4Å: Chain G: I.60, N.61, Y.165, T.166, W.167 Chain H: G.47, G.48, T.49 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:I.60

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 5 residues within 4Å: Chain A: G.133, T.134, R.159, I.176, N.178 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shahid, S. et al., CryoEM structure of Fab HC84.26-HCV E2 complex. To Be Published

Release Date

2024-07-24

Peptides

envelope glycoprotein E2: ADG
HC84.26 Heavy chain: BEHJ
HC84.26 Light chain: CFIK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

B
E

E
B

H
I

J
K

C
F

F
C

I
J

K
L

envelope glycoprotein E2

HC84.26 Heavy chain

HC84.26 Light chain

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