SMTL ID : 8u9y.1

CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-2-mer

Ligands

1 x NAG- NAG- BMA- BMA- BMA: beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-BMA.1: 6 residues within 4Å: Chain A: I.60, N.61, Y.165, W.167 Chain B: G.48, T.49 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: T.166, N.170, E.171, T.172 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: G.133, T.134, N.178 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.4: 9 residues within 4Å: Chain A: D.119, R.121, Q.139, N.194, S.195, T.196, F.198, T.199, K.200 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: N.68, D.69, S.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.69, A:D.69, A:S.70, A:S.70 NAG.6: 1 residues within 4Å: Chain A: N.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shahid, S. et al., CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface. To Be Published

Release Date

2024-09-25

Peptides

Envelope glycoprotein E2: A
HC84.26 heavy chain: BE
HC84.26 light chain: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

E
N

C
F

D
M

Envelope glycoprotein E2

HC84.26 heavy chain

HC84.26 light chain

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