SMTL ID : 8tlz.2 (1 other biounit)

Preclinical Characterization of Pan-NKG2D Ligand-Binding NKG2D Receptor Decoys

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: R.6, N.8, E.25, Q.91, I.93, Y.111 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: D.101, N.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.102

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: T.153, H.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.151, A:T.153, A:H.156, A:H.156

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.4: 7 residues within 4Å: Chain A: Y.7, D.65, L.66, R.94, M.160, C.164, E.167 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.7 Hydrogen bonds: A:Y.7 Salt bridges: A:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rupert, P.B. et al., Preclinical characterization of Pan-NKG2D ligand-binding NKG2D receptor decoys. Heliyon (2024)

Release Date

2024-04-17

Peptides

MHC class I polypeptide-related sequence A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MHC class I polypeptide-related sequence A

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