SMTL ID : 8tnt.1

Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with antibodies F-2-1 and 769C2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: N.42, E.45, D.46, S.49, R.190 Chain B: Q.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.42, A:S.49, A:S.49, A:R.190 NAG.2: 2 residues within 4Å: Chain B: E.20, N.21 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bu, W. et al., Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells. Immunity (2024)

Release Date

2024-03-27

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Glycoprotein 42: C
769C2 light chain: D
769C2 heavy chain: E
F-2-1 light chain: F
F-2-1 heavy chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Envelope glycoprotein H

Envelope glycoprotein L

Glycoprotein 42

769C2 light chain

769C2 heavy chain

F-2-1 light chain

F-2-1 heavy chain

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