SMTL ID : 8tv7.1

SARS-CoV-2 Mac1 in complex with MDOLL-0229

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: D.23, V.25, E.26, A.53 Ligands: VI1.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.26, A:E.26 GOL.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x VI1: (1R,2R)-2-{[3-(methoxycarbonyl)-4,5,6,7,8,9-hexahydrocycloocta[b]thiophen-2-yl]carbamoyl}cyclohexane-1-carboxylic acid

VI1.2: 15 residues within 4Å: Chain A: A.22, D.23, I.24, G.49, V.50, A.53, L.127, A.130, G.131, A.155, V.156, F.157, D.158, L.161 Ligands: GOL.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.50, A:L.127, A:A.130, A:F.157, A:F.157, A:F.157, A:L.161 Hydrogen bonds: A:D.23, A:I.24, A:F.157, A:D.158 Water bridges: A:A.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wazir, S. et al., Discovery of 2-Amide-3-methylester Thiophenes that Target SARS-CoV-2 Mac1 and Repress Coronavirus Replication, Validating Mac1 as an Antiviral Target. J.Med.Chem. (2024)

Release Date

2024-04-24

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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