SMTL ID : 8tyj.1

Crystal structure of SARS-CoV-2 nsp10/nsp16 complex with bound SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: Y.132, K.170, N.198, S.201, E.203 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.132, A:K.170, A:K.170, A:N.198, A:N.198, A:S.201, A:E.203 Water bridges: A:N.43, A:K.46 GOL.3: 7 residues within 4Å: Chain A: V.118, H.119, T.120, Y.152, F.156, Q.159, K.160 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.120, A:T.120, A:Q.159

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 18 residues within 4Å: Chain A: N.43, Y.47, G.71, A.72, G.73, S.74, P.80, G.81, D.99, L.100, N.101, G.113, D.114, C.115, D.130, M.131, Y.132, F.149 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.43, A:G.71, A:G.73, A:G.81, A:L.100, A:N.101, A:D.114, A:C.115, A:Y.132 Water bridges: A:G.71, A:D.99

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain B: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.74, B:C.77, B:H.83, B:C.90 ZN.5: 4 residues within 4Å: Chain B: C.117, C.120, C.128, C.130 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.117, B:C.120, B:C.128, B:C.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, K.P. et al., Crystal structure of SARS-CoV-2 nsp10/nsp16 complex with bound SAH. To Be Published

Release Date

2024-01-24

Peptides

2'-O-methyltransferase: A
Non-structural protein 10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2'-O-methyltransferase

Non-structural protein 10

Related Entries With Identical Sequence