SMTL ID : 8tzo.1

Structure of human Wnt7a bound to WLS and CALR

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- GLC: alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-GLC.1: 26 residues within 4Å: Chain A: N.295, T.297, P.299, W.322, N.325, C.339 Chain B: L.122 Chain C: F.74, C.105, G.106, G.107, Y.109, K.111, G.124, Y.128, M.131, D.135, C.137, P.139, H.145, I.147, N.154, D.317, L.318, W.319, V.321 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:W.319, C:K.111, C:K.111, C:Y.128, C:H.145, C:N.154, A:N.325, C:Y.109, C:K.111, C:K.111, C:D.317 Hydrophobic interactions: C:P.139

1 x PAM: PALMITOLEIC ACID(Covalent)

PAM.2: 9 residues within 4Å: Chain A: S.206 Chain B: D.301, G.305, I.306, S.346, F.347, L.349, F.350, D.353 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.306, B:F.347, B:F.350

1 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.3: 21 residues within 4Å: Chain A: T.210 Chain B: Q.226, F.230, W.234, K.238, M.277, I.280, E.285, G.300, R.303, Q.304, F.307, Y.308, L.311, A.443, T.446, F.473, F.474, I.477, Y.478, W.481 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.307, B:Y.308, B:L.311, B:A.443, B:T.446, B:F.473, B:F.474, B:I.477, A:T.210 Hydrogen bonds: B:W.234, B:R.303 Salt bridges: B:K.238

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain C: Q.26, E.61, K.62, D.63, K.64, D.328 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:Q.26, C:K.62, C:D.328, C:D.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, X. et al., Structure of human Wnt7a bound to WLS and CALR. To Be Published

Release Date

2023-10-18

Peptides

Protein Wnt-7a: A
Protein wntless homolog: B
Calreticulin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Protein Wnt-7a

Protein wntless homolog

Calreticulin

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