SMTL ID : 8tzp.1

Structure of human Wnt7a bound to WLS and RECK

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x PAM: PALMITOLEIC ACID(Covalent)

PAM.1: 7 residues within 4Å: Chain A: S.206 Chain B: D.301, G.305, I.306, F.347, F.350, D.353 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.306, B:F.347, B:F.350

1 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.2: 18 residues within 4Å: Chain A: T.210, T.211 Chain B: Q.226, F.230, W.234, K.238, I.280, E.285, Q.304, F.307, Y.308, L.311, A.443, T.446, F.473, I.477, Y.478, W.481 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.307, B:Y.308, B:L.311, B:A.443, B:T.446, B:I.477, B:W.481, B:W.481, A:T.210 Hydrogen bonds: B:W.234 Salt bridges: B:K.238 pi-Cation interactions: B:F.474

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, X. et al., Molecular basis of Wnt biogenesis, secretion, and Wnt7-specific signaling. Cell (2023)

Release Date

2023-10-18

Peptides

Protein Wnt-7a: A
Protein wntless homolog: B
Reversion-inducing cysteine-rich protein with Kazal motifs: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Protein Wnt-7a

Protein wntless homolog

Reversion-inducing cysteine-rich protein with Kazal motifs

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